Repository of Research and Investigative Information

Repository of Research and Investigative Information

Baqiyatallah University of Medical Sciences

A comparison of loop-mediated isothermal amplification (LAMP) with PCR and rapid urease test (RUT) to detect helicobacter pylori in biopsy samples

(2014) A comparison of loop-mediated isothermal amplification (LAMP) with PCR and rapid urease test (RUT) to detect helicobacter pylori in biopsy samples. Journal of Pure and Applied Microbiology. pp. 1079-1086. ISSN 09737510 (ISSN)

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Abstract

Helicobacter pylori is one of the most successful pathogens and the source of morbidity of about half of the worldwide population. Detection of these bacteria using traditional methods has some difficulties due to existence of some coccoid forms. The aim of this study is to compare different diagnostic methods such as LAMP, RUT and PCR in the patient biopsy samples. In this research, DNA of standard H. pylori extracted by DNG method. The LAMP and PCR were optimized and sensitivity and specificity of tests were studied. Then, 100 biopsy samples were obtained. RUT was done on all the biopsy samples. DNA extraction was done using DNP kit for all patient samples. Then the samples were studied using PCR and LAMP tests. The PCR test sensitivity was obtained 10 per reaction and LAMP test sensitivity was 5 per reaction. No undesirable products were observed in specificity test with DNA samples. 64 of the stomach biopsy samples were positive using RUT and 76 by PCR and 87 by the LAMP. The results indicate LAMP test has higher accuracy, sensitivity and specificity compared to PCR and RUT, therefore LAMP technique could be used as an alternative method in the H. pylori detection especially in developing country.

Item Type: Article
Keywords: Helicobacter pylori LAMP PCR RUT antibiotic agent bacterial DNA urease amplicon antibiotic therapy Article bacterial strain bacterium detection comparative effectiveness controlled clinical trial controlled study diagnostic test accuracy study DNA extraction enzyme activity gene amplification gene sequence Helicobacter infection human human tissue intermethod comparison loop mediated isothermal amplification major clinical study molecular diagnostics nonhuman polymerase chain reaction polymerase chain reaction system rapid urease test recombinant plasmid sensitivity and specificity stomach biopsy
Divisions:
Page Range: pp. 1079-1086
Journal or Publication Title: Journal of Pure and Applied Microbiology
Journal Index: Scopus
Volume: 8
Number: 2
ISSN: 09737510 (ISSN)
Depositing User: مهندس مهدی شریفی
URI: http://eprints.bmsu.ac.ir/id/eprint/123

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