Repository of Research and Investigative Information

Repository of Research and Investigative Information

Baqiyatallah University of Medical Sciences

Survival analysis and functional annotation of long non-coding RNAs in lung adenocarcinoma

(2019) Survival analysis and functional annotation of long non-coding RNAs in lung adenocarcinoma. Journal of Cellular and Molecular Medicine. pp. 5600-5617. ISSN 1582-1838

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Abstract

Long non-coding RNAs (lncRNAs) are a subclass of non-protein coding transcripts that are involved in several regulatory processes and are considered as potential biomarkers for almost all cancer types. This study aims to investigate the prognostic value of lncRNAs for lung adenocarcinoma (LUAD), the most prevalent subtype of lung cancer. To this end, the processed data of The Cancer Genome Atlas LUAD were retrieved from GEPIA and circlncRNAnet databases, matched with each other and integrated with the analysis results of a non-small cell lung cancer plasma RNA-Seq study. Then, the data were filtered in order to separate the differentially expressed lncRNAs that have a prognostic value for LUAD. Finally, the selected lncRNAs were functionally annotated using a bioinformatic and systems biology approach. Accordingly, we identified 19 lncRNAs as the novel LUAD prognostic lncRNAs. Also, based on our results, all 19 lncRNAs might be involved in lung cancer-related biological processes. Overall, we suggested several novel biomarkers and drug targets which could help early diagnosis, prognosis and treatment of LUAD patients.

Item Type: Article
Keywords: bioinformatics functional annotation lung adenocarcinoma prognostic lncRNAs systems biology nucleic-acids web server cancer expression database identification epidemiology biomarkers lncipedia pathways Cell Biology Research & Experimental Medicine
Divisions:
Page Range: pp. 5600-5617
Journal or Publication Title: Journal of Cellular and Molecular Medicine
Journal Index: ISI
Volume: 23
Number: 8
Identification Number: https://doi.org/10.1111/jcmm.14458
ISSN: 1582-1838
Depositing User: مهندس مهدی شریفی
URI: http://eprints.bmsu.ac.ir/id/eprint/2439

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